Convolutional neural networks were implemented in Python 3 under Google Colaboratory46, commonly referred to as Google Colab, which is a research project for prototyping machine learning models on powerful hardware options such as GPUs and TPUs. Med. Using X-ray images we can train a machine learning classifier to detect COVID-19 using Keras and TensorFlow. Google Scholar. Wish you all a very happy new year ! In9, to classify ultrasound medical images, the authors used distance-based FS methods and a Fuzzy Support Vector Machine (FSVM). Eng. The symbol \(R_B\) refers to Brownian motion. However, the proposed FO-MPA approach has an advantage in performance compared to other works. PubMedGoogle Scholar. https://doi.org/10.1038/s41598-020-71294-2, DOI: https://doi.org/10.1038/s41598-020-71294-2. Abbas, A., Abdelsamea, M.M. & Gaber, M.M. Classification of covid-19 in chest x-ray images using detrac deep convolutional neural network. Authors Acharya, U. R. et al. Also, in58 a new CNN architecture called EfficientNet was proposed, where more blocks were added on top of the model after applying normalization of images pixels intensity to the range (0 to 1). (8) at \(T = 1\), the expression of Eq. For the image features that led to categorization, there were varied levels of agreement in the interobserver and intraobserver components that . }\delta (1-\delta )(2-\delta )(3-\delta ) U_{i}(t-3) + P.R\bigotimes S_i. JMIR Formative Research - Classifying COVID-19 Patients From Chest X-ray Images Using Hybrid Machine Learning Techniques: Development and Evaluation Published on 28.2.2023 in Vol 7 (2023) Preprints (earlier versions) of this paper are available at https://preprints.jmir.org/preprint/42324, first published August 31, 2022 . Dual feature selection and rebalancing strategy using metaheuristic optimization algorithms in x-ray image datasets. Use the Previous and Next buttons to navigate the slides or the slide controller buttons at the end to navigate through each slide. (2) To extract various textural features using the GLCM algorithm. Furthermore, using few hundreds of images to build then train Inception is considered challenging because deep neural networks need large images numbers to work efficiently and produce efficient features. For Dataset 2, FO-MPA showed acceptable (not the best) performance, as it achieved slightly similar results to the first and second ranked algorithm (i.e., MPA and SMA) on mean, best, max, and STD measures. Sahlol, A.T., Yousri, D., Ewees, A.A. et al. To segment brain tissues from MRI images, Kong et al.17 proposed an FS method using two methods, called a discriminative clustering method and the information theoretic discriminative segmentation. Furthermore, deep learning using CNN is considered one of the best choices in medical imaging applications20, especially classification. In ancient India, according to Aelian, it was . In this work, the MPA is enhanced by fractional calculus memory feature, as a result, Fractional-order Marine Predators Algorithm (FO-MPA) is introduced. J. Etymology. (5). the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in We have used RMSprop optimizer for weight updates, cross entropy loss function and selected learning rate as 0.0001. Rep. 10, 111 (2020). 6, right), our approach still provides an overall accuracy of 99.68%, putting it first with a slight advantage over MobileNet (99.67 %). (8) can be remodeled as below: where \(D^1[x(t)]\) represents the difference between the two followed events. As seen in Fig. For the exploration stage, the weibull distribution has been applied rather than Brownian to bost the performance of the predator in stage 2 and the prey velocity in stage 1 based on the following formula: Where k, and \(\zeta\) are the scale and shape parameters. Also, As seen in Fig. 115, 256269 (2011). Our method is able to classify pneumonia from COVID-19 and visualize an abnormal area at the same time. In this paper, we used two different datasets. (4). The MCA-based model is used to process decomposed images for further classification with efficient storage. used VGG16 to classify Covid-19 and achieved good results with an accuracy of 86% [ 22 ]. By submitting a comment you agree to abide by our Terms and Community Guidelines. A survey on deep learning in medical image analysis. Comput. 35, 1831 (2017). Also, other recent published works39, who combined a CNN architecture with Weighted Symmetric Uncertainty (WSU) to select optimal features for traffic classification. Syst. Dhanachandra, N. & Chanu, Y. J. Faramarzi, A., Heidarinejad, M., Mirjalili, S. & Gandomi, A. H. Marine predators algorithm: a nature-inspired metaheuristic. Chollet, F. Xception: Deep learning with depthwise separable convolutions. PubMed Central Isolation and characterization of a bat sars-like coronavirus that uses the ace2 receptor. 51, 810820 (2011). In addition, up to our knowledge, MPA has not applied to any real applications yet. The evaluation showed that the RDFS improved SVM robustness against reconstruction kernel and slice thickness. Image segmentation is a necessary image processing task that applied to discriminate region of interests (ROIs) from the area of outsides. They applied a fuzzy decision tree classifier, and they found that fuzzy PSO improved the classification accuracy. To evaluate the performance of the proposed model, we computed the average of both best values and the worst values (Max) as well as STD and computational time for selecting features. The following stage was to apply Delta variants. The definitions of these measures are as follows: where TP (true positives) refers to the positive COVID-19 images that were correctly labeled by the classifier, while TN (true negatives) is the negative COVID-19 images that were correctly labeled by the classifier. Early diagnosis, timely treatment, and proper confinement of the infected patients are some possible ways to control the spreading of . Accordingly, that reflects on efficient usage of memory, and less resource consumption. The 30-volume set, comprising the LNCS books 12346 until 12375, constitutes the refereed proceedings of the 16th European Conference on Computer Vision, ECCV 2020, which was planned to be held in Glasgow, UK, during August 23-28, 2020. Szegedy, C. et al. Book Figure5, shows that FO-MPA shows an efficient and faster convergence than the other optimization algorithms on both datasets. They achieved 98.08 % and 96.51 % of accuracy and F-Score, respectively compared to our approach with 98.77 % and 98.2% for accuracy and F-Score, respectively. \delta U_{i}(t)+ \frac{1}{2! To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. Sohail, A. S.M., Bhattacharya, P., Mudur, S.P. & Krishnamurthy, S. Classification of ultrasound medical images using distance based feature selection and fuzzy-svm. Classification of COVID19 using Chest X-ray Images in Keras 4.6 33 ratings Share Offered By In this Guided Project, you will: Learn to Build and Train the Convolutional Neural Network using Keras with Tensorflow as Backend Learn to Visualize Data in Matplotlib Learn to make use of the Trained Model to Predict on a New Set of Data 2 hours Li et al.34 proposed a self-adaptive bat algorithm (BA) to address two problems in lung X-ray images, rebalancing, and feature selection. 11, 243258 (2007). Automatic CNN-based Chest X-Ray (CXR) image classification for detecting Covid-19 attracted so much attention. The GL in the discrete-time form can be modeled as below: where T is the sampling period, and m is the length of the memory terms (memory window). The prey follows Weibull distribution during discovering the search space to detect potential locations of its food. Our dataset consisting of 60 chest CT images of COVID-19 and non-COVID-19 patients was pre-processed and segmented using a hybrid watershed and fuzzy c-means algorithm. Inf. Can ai help in screening viral and covid-19 pneumonia? FP (false positives) are the positive COVID-19 images that were incorrectly labeled as negative COVID-19, while FN (false negatives) are the negative COVID-19 images that were mislabeled as positive COVID-19 images. 6 (left), for dataset 1, it can be seen that our proposed FO-MPA approach outperforms other CNN models like VGGNet, Xception, Inception, Mobilenet, Nasnet, and Resnet. Therefore, a feature selection technique can be applied to perform this task by removing those irrelevant features. How- individual class performance. Comparison with other previous works using accuracy measure. Figure7 shows the most recent published works as in54,55,56,57 and44 on both dataset 1 and dataset 2. In such a case, in order to get the advantage of the power of CNN and also, transfer learning can be applied to minimize the computational costs21,22. Zhang, N., Ruan, S., Lebonvallet, S., Liao, Q. The proposed approach was evaluated on two public COVID-19 X-ray datasets which achieves both high performance and reduction of computational complexity. (iii) To implement machine learning classifiers for classification of COVID and non-COVID image classes. ISSN 2045-2322 (online). Scientific Reports Volume 10, Issue 1, Pages - Publisher. what medical images are commonly used for COVID-19 classification and what are the methods for COVID-19 classification. Figure6 shows a comparison between our FO-MPA approach and other CNN architectures. Imaging 29, 106119 (2009). Based on54, the later step reduces the memory requirements, and improve the efficiency of the framework. A deep feature learning model for pneumonia detection applying a combination of mRMR feature selection and machine learning models. where \(REfi_{i}\) represents the importance of feature i that were calculated from all trees, where \(normfi_{ij}\) is the normalized feature importance for feature i in tree j, also T is the total number of trees. In Smart Intelligent Computing and Applications, 305313 (Springer, 2019). In Proceedings of the IEEE Conference on computer vision and pattern recognition workshops, 806813 (2014). Compared to59 which is one of the most recent published works on X-ray COVID-19, a combination between You Only Look Once (YOLO) which is basically a real time object detection system and DarkNet as a classifier was proposed. D.Y. arXiv preprint arXiv:2004.05717 (2020). (20), \(FAD=0.2\), and W is a binary solution (0 or 1) that corresponded to random solutions. 97, 849872 (2019). Table4 show classification accuracy of FO-MPA compared to other feature selection algorithms, where the best, mean, and STD for classification accuracy were calculated for each one, besides time consumption and the number of selected features (SF). Donahue, J. et al. They applied the SVM classifier with and without RDFS. volume10, Articlenumber:15364 (2020) J. Clin. I am passionate about leveraging the power of data to solve real-world problems. While55 used different CNN structures. Multimedia Tools Appl. Biocybern. The memory terms of the prey are updated at the end of each iteration based on first in first out concept. To address this challenge, this paper proposes a two-path semi- supervised deep learning model, ssResNet, based on Residual Neural Network (ResNet) for COVID-19 image classification, where two paths refer to a supervised path and an unsupervised path, respectively. Scientific Reports (Sci Rep) Besides, the used statistical operations improve the performance of the FO-MPA algorithm because it supports the algorithm in selecting only the most important and relevant features. While, MPA, BPSO, SCA, and SGA obtained almost the same accuracy, followed by both bGWO, WOA, and SMA. & Carlsson, S. Cnn features off-the-shelf: an astounding baseline for recognition. It also contributes to minimizing resource consumption which consequently, reduces the processing time. Therefore, in this paper, we propose a hybrid classification approach of COVID-19. Med. The shape of the output from the Inception is (5, 5, 2048), which represents a feature vector of size 51200. Extensive comparisons had been implemented to compare the FO-MPA with several feature selection algorithms, including SMA, HHO, HGSO, WOA, SCA, bGWO, SGA, BPSO, besides the classic MPA. Image Anal. Methods Med. The results of max measure (as in Eq. The different proposed models will be trained with three-class balanced dataset which consists of 3000 images, 1000 images for each class. In this paper, filters of size 2, besides a stride of 2 and \(2 \times 2\) as Max pool, were adopted. Efficient classification of white blood cell leukemia with improved swarm optimization of deep features. A. et al. (22) can be written as follows: By taking into account the early mentioned relation in Eq. Four measures for the proposed method and the compared algorithms are listed. The algorithm combines the assessment of image quality, digital image processing and deep learning for segmentation of the lung tissues and their classification. The parameters of each algorithm are set according to the default values. Therefore, several pre-trained models have won many international image classification competitions such as VGGNet24, Resnet25, Nasnet26, Mobilenet27, Inception28 and Xception29. Li, S., Chen, H., Wang, M., Heidari, A. Fractional-order calculus (FC) gains the interest of many researchers in different fields not only in the modeling sectors but also in developing the optimization algorithms. The results are the best achieved on these datasets when compared to a set of recent feature selection algorithms. In general, feature selection (FS) methods are widely employed in various applications of medical imaging applications. <span> <h5>Background</h5> <p>The COVID19 pandemic has precipitated global apprehensions about increased fatalities and raised concerns about gaps in healthcare . Vis. In Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 19 (2015). arXiv preprint arXiv:1711.05225 (2017). To obtain The second CNN architecture classifies the X-ray image into three classes, i.e., normal, pneumonia, and COVID-19. Although the performance of the MPA and bGWO was slightly similar, the performance of SGA and WOA were the worst in both max and min measures. The results are the best achieved compared to other CNN architectures and all published works in the same datasets. Some people say that the virus of COVID-19 is. Litjens, G. et al. Extensive evaluation experiments had been carried out with a collection of two public X-ray images datasets. Google Scholar. New Images of Novel Coronavirus SARS-CoV-2 Now Available NIAID Now | February 13, 2020 This scanning electron microscope image shows SARS-CoV-2 (yellow)also known as 2019-nCoV, the virus that causes COVID-19isolated from a patient in the U.S., emerging from the surface of cells (blue/pink) cultured in the lab. & Cmert, Z. The code of the proposed approach is also available via the following link [https://drive.google.com/file/d/1-oK-eeEgdCMCnykH364IkAK3opmqa9Rvasx/view?usp=sharing]. Therefore, reducing the size of the feature from about 51 K as extracted by deep neural networks (Inception) to be 128.5 and 86 in dataset 1 and dataset 2, respectively, after applying FO-MPA algorithm while increasing the general performance can be considered as a good achievement as a machine learning goal. Stage 2: The prey/predator in this stage begin exploiting the best location that detects for their foods. & Zhu, Y. Kernel feature selection to fuse multi-spectral mri images for brain tumor segmentation. Multimedia Tools Appl. The proposed IFM approach is summarized as follows: Extracting deep features from Inception, where about 51 K features were extracted. For fair comparison, each algorithms was performed (run) 25 times to produce statistically stable results.The results are listed in Tables3 and4. All classication models ever, the virus mutates, and new variants emerge and dis- performed better in classifying the Non-COVID-19 images appear. They applied the SVM classifier for new MRI images to segment brain tumors, automatically. It based on using a deep convolutional neural network (Inception) for extracting features from COVID-19 images, then filtering the resulting features using Marine Predators Algorithm (MPA), enhanced by fractional-order calculus(FO). The whale optimization algorithm. The proposed approach selected successfully 130 and 86 out of 51 K features extracted by inception from dataset 1 and dataset 2, while improving classification accuracy at the same time. Then, applying the FO-MPA to select the relevant features from the images. Li, H. etal. Future Gener. Generally, the most stable algorithms On dataset 1 are WOA, SCA, HGSO, FO-MPA, and SGA, respectively. Phys. You have a passion for computer science and you are driven to make a difference in the research community? Then, using an enhanced version of Marine Predators Algorithm to select only relevant features. Netw. One of these datasets has both clinical and image data. 152, 113377 (2020). 2 (right). Al-qaness, M. A., Ewees, A. In Future of Information and Communication Conference, 604620 (Springer, 2020). Deep residual learning for image recognition. a cough chills difficulty breathing tiredness body aches headaches a new loss of taste or smell a sore throat nausea and vomiting diarrhea Not everyone with COVID-19 develops all of these. arXiv preprint arXiv:2003.11597 (2020). COVID-19 Chest X -Ray Image Classification with Neural Network Currently we are suffering from COVID-19, and the situation is very serious. implemented the deep neural networks and classification as well as prepared the related figures and manuscript text. (9) as follows. Imaging Syst. Duan, H. et al. ADS For example, Da Silva et al.30 used the genetic algorithm (GA) to develop feature selection methods for ranking the quality of medical images. \(\Gamma (t)\) indicates gamma function. It achieves a Dice score of 0.9923 for segmentation, and classification accuracies of 0. Also, image segmentation can extract critical features, including the shape of tissues, and texture5,6. Propose similarity regularization for improving C. Deep learning plays an important role in COVID-19 images diagnosis. Provided by the Springer Nature SharedIt content-sharing initiative, Environmental Science and Pollution Research (2023), Archives of Computational Methods in Engineering (2023), Arabian Journal for Science and Engineering (2023). medRxiv (2020). Image Classification With ResNet50 Convolution Neural Network (CNN) on Covid-19 Radiography | by Emmanuella Anggi | The Startup | Medium 500 Apologies, but something went wrong on our end.. Narayanan, S.J., Soundrapandiyan, R., Perumal, B. The symbol \(r\in [0,1]\) represents a random number. In this paper, we apply a convolutional neural network (CNN) to extract features from COVID-19 X-Ray images. In this subsection, a comparison with relevant works is discussed. They used different images of lung nodules and breast to evaluate their FS methods. Accordingly, the FC is an efficient tool for enhancing the performance of the meta-heuristic algorithms by considering the memory perspective during updating the solutions. Number of extracted feature and classification accuracy by FO-MPA compared to other CNNs on dataset 1 (left) and on dataset 2 (right). (3), the importance of each feature is then calculated. They employed partial differential equations for extracting texture features of medical images. The announcement confirmed that from May 8, following Japan's Golden Week holiday period, COVID-19 will be officially downgraded to Class 5, putting the virus on the same classification level as seasonal influenza. Inceptions layer details and layer parameters of are given in Table1. SharifRazavian, A., Azizpour, H., Sullivan, J. Coronavirus Disease (COVID-19): A primer for emergency physicians (2020) Summer Chavez et al. For general case based on the FC definition, the Eq. . Chexnet: Radiologist-level pneumonia detection on chest x-rays with deep learning. FCM reinforces the ANFIS classification learning phase based on the features of COVID-19 patients. One of the best methods of detecting. The authors declare no competing interests. Average of the consuming time and the number of selected features in both datasets. Lett. On the second dataset, dataset 2 (Fig. J. Med. So some statistical operations have been added to exclude irrelevant and noisy features, and by making it more computationally efficient and stable, they are summarized as follows: Chi-square is applied to remove the features which have a high correlation values by computing the dependence between them. Int. Nguyen, L.D., Lin, D., Lin, Z. The optimum path forest (OPF) classifier was applied to classify pulmonary nodules based on CT images. Based on Standard Deviation measure (STD), the most stable algorithms were SCA, SGA, BPSO, and bGWO, respectively. Feature selection based on gaussian mixture model clustering for the classification of pulmonary nodules based on computed tomography. Yousri, D. & Mirjalili, S. Fractional-order cuckoo search algorithm for parameter identification of the fractional-order chaotic, chaotic with noise and hyper-chaotic financial systems. Besides, the binary classification between two classes of COVID-19 and normal chest X-ray is proposed. A combination of fractional-order and marine predators algorithm (FO-MPA) is considered an integration among a robust tool in mathematics named fractional-order calculus (FO). The Weibull Distribution is a heavy-tied distribution which presented as in Fig. From Fig. Machine learning (ML) methods can play vital roles in identifying COVID-19 patients by visually analyzing their chest x-ray images. This means we can use pre-trained model weights, leveraging all of the time and data it took for training the convolutional part, and just remove the FCN layer. The first one, dataset 1 was collected by Joseph Paul Cohen and Paul Morrison and Lan Dao42, where some COVID-19 images were collected by an Italian Cardiothoracic radiologist. Improving the ranking quality of medical image retrieval using a genetic feature selection method. All data used in this paper is available online in the repository, [https://github.com/ieee8023/covid-chestxray-dataset], [https://stanfordmlgroup.github.io/projects/chexnet], [https://www.kaggle.com/paultimothymooney/chest-xray-pneumonia] and [https://www.sirm.org/en/category/articles/covid-19-database/]. It classifies the chest X-ray images into three categories that includes Covid-19, Pneumonia and normal. Moreover, a multi-objective genetic algorithm was applied to search for the optimal features subset. 2020-09-21 . This dataset currently contains hundreds of frontal view X-rays and is the largest public resource for COVID-19 image and prognostic data, making it a necessary resource to develop and evaluate tools to aid in the treatment of CO VID-19. Inspired by our recent work38, where VGG-19 besides statistically enhanced Salp Swarm Algorithm was applied to select the best features for White Blood Cell Leukaemia classification. In Table4, for Dataset 1, the proposed FO-MPA approach achieved the highest accuracy in the best and mean measures, as it reached 98.7%, and 97.2% of correctly classified samples, respectively. PubMed In this paper, we used TPUs for powerful computation, which is more appropriate for CNN. Imaging 35, 144157 (2015). COVID-19 image classification using deep learning: Advances, challenges and opportunities COVID-19 image classification using deep learning: Advances, challenges and opportunities Comput Biol Med. IEEE Trans. According to the formula10, the initial locations of the prey and predator can be defined as below: where the Elite matrix refers to the fittest predators. In 2018 IEEE International Symposium on Circuits and Systems (ISCAS), 15 (IEEE, 2018). Li et al.36 proposed an FS method using a discrete artificial bee colony (ABC) to improve the classification of Parkinsons disease. Softw. 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Keywords - Journal. is applied before larger sized kernels are applied to reduce the dimension of the channels, which accordingly, reduces the computation cost. The evaluation confirmed that FPA based FS enhanced classification accuracy. Lilang Zheng, Jiaxuan Fang, Xiaorun Tang, Hanzhang Li, Jiaxin Fan, Tianyi Wang, Rui Zhou, Zhaoyan Yan. CNNs are more appropriate for large datasets. The classification accuracy of MPA, WOA, SCA, and SGA are almost the same. https://www.sirm.org/category/senza-categoria/covid-19/ (2020). It is also noted that both datasets contain a small number of positive COVID-19 images, and up to our knowledge, there is no other sufficient available published dataset for COVID-19. According to the promising results of the proposed model, that combines CNN as a feature extractor and FO-MPA as a feature selector could be useful and might be successful in being applied in other image classification tasks. Detection of lung cancer on chest ct images using minimum redundancy maximum relevance feature selection method with convolutional neural networks. Also, WOA algorithm showed good results in all measures, unlike dataset 1, which can conclude that no algorithm can solve all kinds of problems. Nature 503, 535538 (2013). If you find something abusive or that does not comply with our terms or guidelines please flag it as inappropriate. et al. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. A., Fan, H. & Abd ElAziz, M. Optimization method for forecasting confirmed cases of covid-19 in china. Inception architecture is described in Fig. Moreover, other COVID-19 positive images were added by the Italian Society of Medical and Interventional Radiology (SIRM) COVID-19 Database45. 111, 300323. These datasets contain hundreds of frontal view X-rays and considered the largest public resource for COVID-19 image data. IRBM https://doi.org/10.1016/j.irbm.2019.10.006 (2019). Robertas Damasevicius. In this subsection, the performance of the proposed COVID-19 classification approach is compared to other CNN architectures. They were manually aggregated from various web based repositories into a machine learning (ML) friendly format with accompanying data loader code. In this work, we have used four transfer learning models, VGG16, InceptionV3, ResNet50, and DenseNet121 for the classification tasks. 79, 18839 (2020). Expert Syst. Cancer 48, 441446 (2012). Table2 depicts the variation in morphology of the image, lighting, structure, black spaces, shape, and zoom level among the same dataset, as well as with the other dataset. The survey asked participants to broadly classify the findings of each chest CT into one of the four RSNA COVID-19 imaging categories, then select which imaging features led to their categorization. Initialize solutions for the prey and predator. Appl. A. Comput. Use of chest ct in combination with negative rt-pcr assay for the 2019 novel coronavirus but high clinical suspicion. For both datasets, the Covid19 images were collected from patients with ages ranging from 40-84 from both genders.
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